SNP Report
Basic Infomation
| Name | rs10520689 dbSNP |
|---|---|
| Location | chr:15,90950358 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1008507 | 1.00[ASW][hapmap];0.89[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes] |
| rs11073928 | 0.81[AMR][1000 genomes] |
| rs11073929 | 0.89[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs11629883 | 0.82[YRI][hapmap] |
| rs11631263 | 0.88[CEU][hapmap];1.00[CHB][hapmap] |
| rs11632722 | 1.00[JPT][hapmap] |
| rs11636205 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11852549 | 0.85[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11853611 | 1.00[JPT][hapmap] |
| rs11854320 | 1.00[CHB][hapmap];0.91[CHD][hapmap] |
| rs12161988 | 0.81[ASW][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap] |
| rs12912909 | 1.00[CHB][hapmap];0.91[CHD][hapmap] |
| rs16944362 | 0.86[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs16944473 | 0.80[EUR][1000 genomes] |
| rs16944485 | 1.00[ASW][hapmap];0.84[GIH][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap] |
| rs16944545 | 1.00[JPT][hapmap] |
| rs16974215 | 0.82[ASW][hapmap];0.84[GIH][hapmap];0.96[TSI][hapmap] |
| rs2158407 | 0.89[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs28667854 | 0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs28702574 | 0.82[AMR][1000 genomes] |
| rs28782602 | 0.87[AMR][1000 genomes] |
| rs28863184 | 0.81[EUR][1000 genomes] |
| rs62020730 | 0.89[EUR][1000 genomes] |
| rs6496679 | 0.88[ASW][hapmap];0.89[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.89[YRI][hapmap] |
| rs6496680 | 0.94[ASW][hapmap];0.84[GIH][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap] |
| rs8027565 | 0.89[CEU][hapmap];1.00[JPT][hapmap] |
| rs8041397 | 0.85[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IQGAP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014