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rVarBase
SNP Report
Basic Infomation
Name
rs11852549  
dbSNP
Location
chr:15,90949904
Allele
T/G
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10520689
0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11636205
0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12441871
0.83[ASN][1000 genomes]
rs16944362
0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28667854
0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28782602
0.82[EUR][1000 genomes]
rs62020730
0.83[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
IQGAP1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)