SNP Report
Basic Infomation
| Name | rs16944545 dbSNP |
|---|---|
| Location | chr:15,91080303 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1008507 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes] |
| rs10520689 | 1.00[JPT][hapmap] |
| rs11073928 | 0.80[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11073929 | 0.85[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11631263 | 0.88[CEU][hapmap] |
| rs11632722 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11638617 | 0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11639199 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11852792 | 0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11853611 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11854320 | 0.83[ASW][hapmap] |
| rs12161988 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12912909 | 0.83[ASW][hapmap] |
| rs16944473 | 0.85[ASN][1000 genomes] |
| rs2158407 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs28455184 | 0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs28630708 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs28691618 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4280212 | 0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4441248 | 0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs58714003 | 0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs62019402 | 0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs62021772 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs62021773 | 0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs62021775 | 0.81[EUR][1000 genomes] |
| rs6496679 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs67409214 | 0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7169522 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs8027565 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs8041397 | 0.85[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | Proximal transcriptional regulation |
| CRTC3 | Distal transcriptional regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014