SNP Report
Basic Infomation
| Name | rs12440050 dbSNP |
|---|---|
| Location | chr:15,91142017 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12438412 | 1.00[CEU][hapmap] |
| rs12438468 | 1.00[CEU][hapmap] |
| rs12438950 | 0.90[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs12439754 | 1.00[CEU][hapmap] |
| rs12439797 | 1.00[CEU][hapmap] |
| rs12440233 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs12440296 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs12440433 | 1.00[CEU][hapmap] |
| rs12441335 | 1.00[CEU][hapmap] |
| rs12441772 | 1.00[CEU][hapmap];0.90[CHB][hapmap] |
| rs12442319 | 0.84[ASN][1000 genomes] |
| rs12442356 | 1.00[CEU][hapmap] |
| rs12442767 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12442943 | 1.00[CEU][hapmap];0.90[CHB][hapmap] |
| rs2238326 | 1.00[CEU][hapmap] |
| rs2283440 | 1.00[CEU][hapmap] |
| rs2283446 | 1.00[CEU][hapmap] |
| rs2286288 | 1.00[CEU][hapmap] |
| rs2301830 | 1.00[CEU][hapmap] |
| rs2301831 | 1.00[CEU][hapmap] |
| rs3743412 | 1.00[CEU][hapmap] |
| rs6496694 | 0.90[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs7162382 | 0.90[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs7164690 | 0.84[ASN][1000 genomes] |
| rs7180428 | 0.90[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs7183308 | 1.00[CEU][hapmap] |
| rs8024877 | 0.90[CHB][hapmap];0.82[ASN][1000 genomes] |
| rs8025115 | 0.81[ASN][1000 genomes] |
| rs8032275 | 1.00[CEU][hapmap] |
| rs8033935 | 1.00[CEU][hapmap] |
| rs8037560 | 1.00[CEU][hapmap] |
| rs8041663 | 1.00[CHB][hapmap];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | Proximal transcriptional regulation |
| ENSG00000259212 | Proximal transcriptional regulation |
| CRTC3 | Distal transcriptional regulation |
| ENSG00000259212 | Distal transcriptional regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014