SNP Report
Basic Infomation
| Name | rs12442319 dbSNP |
|---|---|
| Location | chr:15,91131418 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12437598 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12437992 | 1.00[AMR][1000 genomes] |
| rs12438468 | 1.00[AMR][1000 genomes] |
| rs12438950 | 1.00[ASN][1000 genomes] |
| rs12439797 | 1.00[AMR][1000 genomes] |
| rs12440050 | 0.84[ASN][1000 genomes] |
| rs12440233 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12440296 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12442767 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12442785 | 1.00[AMR][1000 genomes] |
| rs12442943 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2286288 | 1.00[AMR][1000 genomes] |
| rs35584114 | 1.00[AMR][1000 genomes] |
| rs6496694 | 0.97[ASN][1000 genomes] |
| rs7162382 | 1.00[ASN][1000 genomes] |
| rs7164690 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7180428 | 1.00[ASN][1000 genomes] |
| rs8024877 | 0.98[ASN][1000 genomes] |
| rs8025115 | 0.97[ASN][1000 genomes] |
| rs8041663 | 0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014