SNP Report
Basic Infomation
| Name | rs12438950 dbSNP |
|---|---|
| Location | chr:15,91127314 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11855992 | 0.90[EUR][1000 genomes] |
| rs11857213 | 0.81[EUR][1000 genomes] |
| rs11858728 | 0.84[EUR][1000 genomes] |
| rs12437598 | 0.86[ASN][1000 genomes] |
| rs12440050 | 0.90[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs12440233 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs12440296 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs12441772 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs12442319 | 1.00[ASN][1000 genomes] |
| rs12442767 | 0.90[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs12442943 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs6496694 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7162010 | 0.90[EUR][1000 genomes] |
| rs7162382 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7164690 | 1.00[ASN][1000 genomes] |
| rs7169230 | 0.89[CEU][hapmap] |
| rs7175054 | 0.90[EUR][1000 genomes] |
| rs7175707 | 0.90[EUR][1000 genomes] |
| rs7180428 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7182899 | 0.87[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs8024877 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs8025115 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8031453 | 0.87[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs8033053 | 0.84[EUR][1000 genomes] |
| rs8041663 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000259212 | Distal transcriptional regulation |
| CRTC3 | Distal transcriptional regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014