SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11853755	0.89[EUR][1000 genomes]
rs11857213	0.88[EUR][1000 genomes]
rs11858728	0.94[EUR][1000 genomes]
rs12438950	0.90[EUR][1000 genomes]
rs56852223	0.89[EUR][1000 genomes]
rs6496694	0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs71311223	0.80[AFR][1000 genomes]
rs7162010	1.00[CEU][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7162382	0.88[CEU][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs7166173	0.80[AFR][1000 genomes]
rs7167015	0.84[EUR][1000 genomes]
rs7168378	0.84[EUR][1000 genomes]
rs7169230	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs7175054	1.00[CEU][hapmap];0.87[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7175707	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7180428	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs7182899	0.87[CEU][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs8024877	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs8025115	0.86[EUR][1000 genomes]
rs8031453	0.87[CEU][hapmap];0.89[LWK][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8033053	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8040777	0.89[EUR][1000 genomes]
rs8041663	0.86[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
CRTC3	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)