SNP Report
Basic Infomation
| Name | rs8025115 dbSNP |
|---|---|
| Location | chr:15,91122971 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11855992 | 0.86[EUR][1000 genomes] |
| rs11858728 | 0.83[EUR][1000 genomes] |
| rs12437598 | 0.89[ASN][1000 genomes] |
| rs12438950 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12440050 | 0.81[ASN][1000 genomes] |
| rs12440233 | 0.97[ASN][1000 genomes] |
| rs12440296 | 0.97[ASN][1000 genomes] |
| rs12442319 | 0.97[ASN][1000 genomes] |
| rs12442767 | 0.82[ASN][1000 genomes] |
| rs12442943 | 0.91[ASN][1000 genomes] |
| rs6496694 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7162010 | 0.86[EUR][1000 genomes] |
| rs7162382 | 0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7164690 | 0.97[ASN][1000 genomes] |
| rs7175054 | 0.86[EUR][1000 genomes] |
| rs7175707 | 0.86[EUR][1000 genomes] |
| rs7180428 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8024877 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs8031453 | 0.87[EUR][1000 genomes] |
| rs8033053 | 0.83[EUR][1000 genomes] |
| rs8041663 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014