SNP Report
Basic Infomation
| Name | rs56852223 dbSNP |
|---|---|
| Location | chr:15,91099614 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11853755 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11855992 | 0.89[EUR][1000 genomes] |
| rs11857213 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11858728 | 0.89[EUR][1000 genomes] |
| rs7162010 | 0.89[EUR][1000 genomes] |
| rs7162382 | 0.81[EUR][1000 genomes] |
| rs7167015 | 0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7168378 | 0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7169230 | 0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7175054 | 0.89[EUR][1000 genomes] |
| rs7175707 | 0.89[EUR][1000 genomes] |
| rs7180428 | 0.82[EUR][1000 genomes] |
| rs7182899 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs8024877 | 0.81[EUR][1000 genomes] |
| rs8031453 | 0.90[EUR][1000 genomes] |
| rs8033053 | 0.86[EUR][1000 genomes] |
| rs8040777 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | Distal transcriptional regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014