SNP Report
Basic Infomation
| Name | rs12438412 dbSNP |
|---|---|
| Location | chr:15,91305055 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12438468 | 1.00[CEU][hapmap] |
| rs12439797 | 1.00[CEU][hapmap] |
| rs12440050 | 1.00[CEU][hapmap] |
| rs12440233 | 1.00[CEU][hapmap] |
| rs12440296 | 1.00[CEU][hapmap] |
| rs12440433 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs12440874 | 0.94[ASN][1000 genomes] |
| rs12442356 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs12442767 | 1.00[CEU][hapmap] |
| rs2286288 | 1.00[CEU][hapmap] |
| rs28363377 | 0.88[ASN][1000 genomes] |
| rs28385009 | 1.00[ASN][1000 genomes] |
| rs28385032 | 0.94[ASN][1000 genomes] |
| rs28385083 | 0.94[ASN][1000 genomes] |
| rs28385088 | 0.94[ASN][1000 genomes] |
| rs28385089 | 0.94[ASN][1000 genomes] |
| rs28385105 | 0.84[ASN][1000 genomes] |
| rs28385107 | 0.94[ASN][1000 genomes] |
| rs28385120 | 0.84[ASN][1000 genomes] |
| rs55968354 | 0.94[ASN][1000 genomes] |
| rs7167216 | 1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs7183308 | 1.00[CEU][hapmap] |
| rs8032275 | 1.00[CEU][hapmap] |
| rs8033935 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs8034264 | 0.94[ASN][1000 genomes] |
| rs8037560 | 1.00[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BLM | Proximal transcriptional regulation |
| BLM | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014