SNP Report

Basic Infomation

Name	rs12933794 dbSNP
Location	chr:16,23934299
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 72)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1005878	0.84[ASN][1000 genomes]
rs10221006	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10459766	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10775269	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11074587	0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11641926	1.00[ASN][1000 genomes]
rs11644907	0.85[JPT][hapmap]
rs12446563	0.97[ASN][1000 genomes]
rs12926067	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12927751	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12931116	0.81[CEU][hapmap]
rs12932420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13338431	1.00[ASN][1000 genomes]
rs1465195	0.84[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs1468130	0.81[CEU][hapmap]
rs169029	0.88[EUR][1000 genomes]
rs1858869	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1858870	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1858871	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1858872	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs195986	0.96[CEU][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs195987	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs195990	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs195991	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs195995	1.00[CEU][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs195996	0.96[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs195997	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs195999	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs196001	0.87[EUR][1000 genomes]
rs1989647	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs2188356	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28435782	0.97[ASN][1000 genomes]
rs28734145	0.82[ASN][1000 genomes]
rs2878156	0.92[CEU][hapmap]
rs3785387	0.84[CEU][hapmap]
rs3785390	0.88[CEU][hapmap];0.90[JPT][hapmap]
rs3785391	0.88[CEU][hapmap];0.90[JPT][hapmap]
rs3785392	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3785394	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3826259	0.81[CEU][hapmap]
rs3826261	0.92[CEU][hapmap]
rs56213545	0.97[ASN][1000 genomes]
rs56350292	0.93[ASN][1000 genomes]
rs60055466	0.94[ASN][1000 genomes]
rs60561757	0.91[ASN][1000 genomes]
rs6497700	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs6497703	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs66923906	0.89[ASN][1000 genomes]
rs67922443	0.94[ASN][1000 genomes]
rs7196543	0.91[CEU][hapmap];0.81[CHB][hapmap]
rs7202347	0.87[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs732798	0.92[CEU][hapmap]
rs7404320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8044722	0.83[CEU][hapmap]
rs8051390	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8051531	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs8051574	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8051700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8053880	0.91[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs8054675	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8055482	0.92[CEU][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs8055773	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs8055831	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs8055864	0.82[ASN][1000 genomes]
rs8057516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9806904	0.82[CEU][hapmap]
rs9924831	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9924860	0.81[CEU][hapmap]
rs9924991	0.92[CEU][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs9939895	0.95[CEU][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs9940072	0.81[CEU][hapmap]
rs9940744	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PRKCB	Distal transcriptional regulation
PRKCB	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)