SNP Report

Basic Infomation

Name	rs3826259 dbSNP
Location	chr:16,23877489
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 64)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10775269	0.84[CEU][hapmap]
rs10852256	0.80[ASN][1000 genomes]
rs11074583	0.81[JPT][hapmap]
rs11074584	0.81[ASN][1000 genomes]
rs11074587	0.84[CEU][hapmap]
rs11644964	0.89[ASN][1000 genomes]
rs11645733	0.91[ASN][1000 genomes]
rs11648799	0.91[ASN][1000 genomes]
rs11862363	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12920718	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12923695	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12928465	0.80[ASN][1000 genomes]
rs12929938	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12931116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12931600	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12932420	0.81[CEU][hapmap]
rs12933794	0.81[CEU][hapmap]
rs12934555	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1468130	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs195990	0.81[CEU][hapmap]
rs195991	0.80[CEU][hapmap]
rs195995	0.80[CEU][hapmap]
rs195999	0.81[CEU][hapmap]
rs2188355	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs2188356	0.81[CEU][hapmap]
rs2878156	0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap]
rs35030326	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3785396	0.83[CHB][hapmap];0.83[CHD][hapmap]
rs3785397	0.82[CHB][hapmap]
rs3785403	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs3826260	0.84[CHD][hapmap];0.82[ASN][1000 genomes]
rs3826261	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3826262	0.80[ASN][1000 genomes]
rs55881781	0.91[ASN][1000 genomes]
rs56046165	0.81[ASN][1000 genomes]
rs56098067	0.87[ASN][1000 genomes]
rs56405227	0.85[ASN][1000 genomes]
rs57803503	0.84[ASN][1000 genomes]
rs6497692	0.91[ASN][1000 genomes]
rs7189228	0.89[ASN][1000 genomes]
rs7190694	0.91[CHB][hapmap]
rs7194054	0.89[ASN][1000 genomes]
rs72777933	0.80[ASN][1000 genomes]
rs72777934	0.80[ASN][1000 genomes]
rs72777936	0.81[ASN][1000 genomes]
rs732798	0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap]
rs7404320	0.81[CEU][hapmap]
rs7404819	0.90[ASN][1000 genomes]
rs7404928	0.91[CHB][hapmap];0.93[CHD][hapmap]
rs7405331	0.91[ASN][1000 genomes]
rs8044722	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8046693	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8047317	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.91[ASN][1000 genomes]
rs8051700	0.81[CEU][hapmap]
rs8052865	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8055985	0.91[ASN][1000 genomes]
rs8056286	0.91[ASN][1000 genomes]
rs8056423	0.91[ASN][1000 genomes]
rs8057516	0.81[CEU][hapmap]
rs8063402	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8182198	0.83[CHB][hapmap]
rs9806904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9924860	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs9940072	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap]

rSNP related genes

Symbol	Regulation type
PRKCB	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 6)

eQTL related gene	Source
SLTM	SCAN
PRKCB	seeQTL
PRKCB1	Pritchard
ACSM5	SCAN
UQCRC2	SCAN
GPR139	SCAN