SNP Report
Basic Infomation
| Name | rs12934555 dbSNP |
|---|---|
| Location | chr:16,23885286 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11644964 | 0.99[ASN][1000 genomes] |
| rs11645733 | 0.97[ASN][1000 genomes] |
| rs11646426 | 0.82[ASN][1000 genomes] |
| rs11648799 | 0.97[ASN][1000 genomes] |
| rs11862363 | 0.89[ASN][1000 genomes] |
| rs12920718 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12923695 | 0.89[ASN][1000 genomes] |
| rs12929938 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12931116 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12931600 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1468130 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs35030326 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3826259 | 0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3826261 | 0.85[ASN][1000 genomes] |
| rs55881781 | 0.97[ASN][1000 genomes] |
| rs56098067 | 0.92[ASN][1000 genomes] |
| rs56405227 | 0.90[ASN][1000 genomes] |
| rs57803503 | 0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6497692 | 0.97[ASN][1000 genomes] |
| rs7189228 | 0.99[ASN][1000 genomes] |
| rs7194054 | 0.99[ASN][1000 genomes] |
| rs7404819 | 0.96[ASN][1000 genomes] |
| rs7405331 | 0.97[ASN][1000 genomes] |
| rs8044722 | 0.89[ASN][1000 genomes] |
| rs8046693 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8047317 | 0.97[ASN][1000 genomes] |
| rs8052865 | 0.89[ASN][1000 genomes] |
| rs8055985 | 0.96[ASN][1000 genomes] |
| rs8056286 | 0.96[ASN][1000 genomes] |
| rs8056423 | 0.96[ASN][1000 genomes] |
| rs8063402 | 0.89[ASN][1000 genomes] |
| rs9806904 | 0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRKCB | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014