SNP Report
Basic Infomation
| Name | rs1468130 dbSNP |
|---|---|
| Location | chr:16,23882548 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 57)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10775269 | 0.84[CEU][hapmap] |
| rs11074583 | 0.81[JPT][hapmap] |
| rs11074587 | 0.84[CEU][hapmap] |
| rs11644964 | 0.98[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11645733 | 0.98[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11646426 | 0.82[ASN][1000 genomes] |
| rs11648799 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11862363 | 0.88[ASN][1000 genomes] |
| rs12920718 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12923695 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12929938 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12931116 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12931600 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12932420 | 0.81[CEU][hapmap] |
| rs12933794 | 0.81[CEU][hapmap] |
| rs12934555 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs195990 | 0.81[CEU][hapmap] |
| rs195991 | 0.80[CEU][hapmap] |
| rs195995 | 0.80[CEU][hapmap] |
| rs195999 | 0.81[CEU][hapmap] |
| rs2188355 | 0.81[JPT][hapmap] |
| rs2188356 | 0.81[CEU][hapmap] |
| rs2878156 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap] |
| rs35030326 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3785396 | 0.83[CHB][hapmap];0.88[CHD][hapmap] |
| rs3785397 | 0.82[CHB][hapmap] |
| rs3785403 | 0.81[JPT][hapmap] |
| rs3826259 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3826260 | 0.81[CHD][hapmap] |
| rs3826261 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs55881781 | 0.94[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs56098067 | 0.93[ASN][1000 genomes] |
| rs56405227 | 0.91[ASN][1000 genomes] |
| rs57803503 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6497692 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7189228 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7190694 | 0.91[CHB][hapmap] |
| rs7194054 | 0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs732798 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap] |
| rs7404320 | 0.81[CEU][hapmap] |
| rs7404819 | 0.94[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7404928 | 0.91[CHB][hapmap];0.97[CHD][hapmap] |
| rs7405331 | 0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs8044722 | 1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs8046693 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs8047317 | 1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs8051700 | 0.81[CEU][hapmap] |
| rs8052865 | 0.88[ASN][1000 genomes] |
| rs8055985 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8056286 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8056423 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8057516 | 0.81[CEU][hapmap] |
| rs8063402 | 0.88[ASN][1000 genomes] |
| rs8182198 | 0.83[CHB][hapmap] |
| rs9806904 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9924860 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap] |
| rs9940072 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRKCB | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014