SNP Report

Basic Infomation

Name	rs3826261 dbSNP
Location	chr:16,23877175
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 79)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10221006	0.84[CEU][hapmap]
rs10775269	0.96[CEU][hapmap]
rs11074583	0.81[JPT][hapmap]
rs11074587	0.96[CEU][hapmap]
rs11644964	0.85[ASN][1000 genomes]
rs11645733	0.87[ASN][1000 genomes]
rs11648799	0.87[ASN][1000 genomes]
rs11862363	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12920718	0.87[ASN][1000 genomes]
rs12923695	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12929938	0.85[ASN][1000 genomes]
rs12931116	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12931600	0.85[ASN][1000 genomes]
rs12932420	0.92[CEU][hapmap]
rs12933794	0.92[CEU][hapmap]
rs12934555	0.85[ASN][1000 genomes]
rs1465195	0.85[CEU][hapmap]
rs1468130	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1858871	0.88[CEU][hapmap]
rs195986	0.89[CEU][hapmap]
rs195990	0.92[CEU][hapmap]
rs195991	0.92[CEU][hapmap]
rs195995	0.92[CEU][hapmap]
rs195996	0.88[CEU][hapmap]
rs195997	0.85[CEU][hapmap]
rs195999	0.92[CEU][hapmap]
rs1989647	0.80[CEU][hapmap]
rs2188355	0.81[JPT][hapmap]
rs2188356	0.92[CEU][hapmap]
rs2878156	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs35030326	0.87[ASN][1000 genomes]
rs3785390	0.82[CEU][hapmap]
rs3785391	0.82[CEU][hapmap]
rs3785394	0.80[CEU][hapmap]
rs3785396	0.83[CHB][hapmap]
rs3785397	0.83[CHB][hapmap]
rs3785403	0.81[JPT][hapmap]
rs3826259	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55881781	0.87[ASN][1000 genomes]
rs56098067	0.83[ASN][1000 genomes]
rs56405227	0.81[ASN][1000 genomes]
rs57803503	0.85[ASN][1000 genomes]
rs6497692	0.87[ASN][1000 genomes]
rs6497700	0.85[CEU][hapmap]
rs6497703	0.80[CEU][hapmap]
rs7189228	0.85[ASN][1000 genomes]
rs7190694	0.91[CHB][hapmap]
rs7194054	0.85[ASN][1000 genomes]
rs7196543	0.83[CEU][hapmap]
rs7202347	0.80[CEU][hapmap]
rs732798	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs7404320	0.92[CEU][hapmap]
rs7404819	0.87[ASN][1000 genomes]
rs7404928	0.91[CHB][hapmap]
rs7405331	0.87[ASN][1000 genomes]
rs8044722	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs8046693	0.87[ASN][1000 genomes]
rs8047317	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs8051531	0.84[CEU][hapmap]
rs8051700	0.92[CEU][hapmap]
rs8052865	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8053880	0.84[CEU][hapmap]
rs8054675	0.87[CEU][hapmap]
rs8055482	0.89[CEU][hapmap]
rs8055773	0.86[CEU][hapmap]
rs8055831	0.84[CEU][hapmap]
rs8055985	0.87[ASN][1000 genomes]
rs8056286	0.87[ASN][1000 genomes]
rs8056423	0.87[ASN][1000 genomes]
rs8057516	0.92[CEU][hapmap]
rs8063402	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8182198	0.83[CHB][hapmap]
rs9806904	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9924831	0.85[CEU][hapmap]
rs9924860	0.88[CEU][hapmap];0.95[CHB][hapmap]
rs9924991	0.84[CEU][hapmap]
rs9939895	0.92[CEU][hapmap]
rs9940072	0.88[CEU][hapmap];0.95[CHB][hapmap]
rs9940744	0.82[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
PRKCB	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)