SNP Report

Basic Infomation

Name	rs3785397 dbSNP
Location	chr:16,23903132
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 25)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11643715	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11644907	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs12931116	0.82[CHB][hapmap]
rs1468130	0.82[CHB][hapmap]
rs2023669	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28508212	0.82[ASN][1000 genomes]
rs2878156	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs3785396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3785398	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3826259	0.82[CHB][hapmap]
rs3826261	0.83[CHB][hapmap]
rs6497700	0.81[JPT][hapmap]
rs7190694	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7205440	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs732798	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs7404928	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7405373	0.84[ASN][1000 genomes]
rs8044722	0.82[CHB][hapmap]
rs8047317	0.82[CHB][hapmap]
rs8182198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs877657	0.84[ASN][1000 genomes]
rs9806904	0.83[CHB][hapmap]
rs9924860	0.86[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs9940072	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs9944293	0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PRKCB	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)