SNP Report

Basic Infomation

Name	rs2878156 dbSNP
Location	chr:16,23903463
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 63)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10221006	0.84[CEU][hapmap];0.80[JPT][hapmap]
rs10775269	0.96[CEU][hapmap];0.80[JPT][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11074587	0.96[CEU][hapmap]
rs11643715	0.93[ASN][1000 genomes]
rs11644907	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs12923337	0.81[EUR][1000 genomes]
rs12931116	0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap]
rs12932420	0.92[CEU][hapmap];0.80[JPT][hapmap];0.82[MEX][hapmap]
rs12933794	0.92[CEU][hapmap]
rs1465195	0.84[CEU][hapmap]
rs1468130	0.88[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap]
rs1858871	0.88[CEU][hapmap];0.80[JPT][hapmap];0.82[MEX][hapmap]
rs195986	0.88[CEU][hapmap]
rs195990	0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[MEX][hapmap]
rs195991	0.91[CEU][hapmap]
rs195995	0.91[CEU][hapmap]
rs195996	0.88[CEU][hapmap]
rs195997	0.84[CEU][hapmap]
rs195999	0.92[CEU][hapmap]
rs1989647	0.80[CEU][hapmap]
rs2023669	0.96[ASN][1000 genomes]
rs2188356	0.92[CEU][hapmap];0.86[MEX][hapmap]
rs28508212	0.85[ASN][1000 genomes]
rs3785387	0.80[CEU][hapmap]
rs3785390	0.80[CEU][hapmap]
rs3785391	0.80[CEU][hapmap]
rs3785392	0.80[JPT][hapmap]
rs3785394	0.80[CEU][hapmap];0.80[JPT][hapmap]
rs3785396	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs3785397	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs3785398	0.84[ASN][1000 genomes]
rs3826259	0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap]
rs3826261	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs6497700	0.84[CEU][hapmap]
rs6497703	0.80[CEU][hapmap];0.80[JPT][hapmap]
rs7190694	0.86[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7196543	0.83[CEU][hapmap]
rs7202347	0.80[CEU][hapmap]
rs7205440	0.96[ASN][1000 genomes]
rs732798	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7404320	0.92[CEU][hapmap];0.80[JPT][hapmap]
rs7404928	0.86[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7405373	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8044722	0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap]
rs8047317	0.87[CHB][hapmap];0.86[CHD][hapmap]
rs8051531	0.84[CEU][hapmap];0.80[JPT][hapmap]
rs8051700	0.92[CEU][hapmap];0.80[JPT][hapmap];0.86[MEX][hapmap]
rs8053880	0.84[CEU][hapmap]
rs8054675	0.86[CEU][hapmap]
rs8055482	0.88[CEU][hapmap]
rs8055773	0.86[CEU][hapmap]
rs8055831	0.84[CEU][hapmap]
rs8057516	0.92[CEU][hapmap];0.80[JPT][hapmap]
rs8182198	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs877657	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9806904	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs9924831	0.83[CEU][hapmap];0.80[JPT][hapmap]
rs9924860	0.88[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs9924991	0.84[CEU][hapmap]
rs9939895	0.91[CEU][hapmap]
rs9940072	0.88[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs9940744	0.80[CEU][hapmap]
rs9944293	0.87[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PRKCB	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 6)

eQTL related gene	Source
PRKCB	seeQTL
IGSF3	seeQTL
ACSM5	SCAN
PRKCB	SCAN
GP2	SCAN
GPR139	SCAN