SNP Report
Basic Infomation
| Name | rs877657 dbSNP |
|---|---|
| Location | chr:16,23898673 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11643715 | 0.82[ASN][1000 genomes] |
| rs12923337 | 0.90[ASN][1000 genomes] |
| rs2023669 | 0.83[ASN][1000 genomes] |
| rs28508212 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2878156 | 0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3785396 | 0.84[ASN][1000 genomes] |
| rs3785397 | 0.84[ASN][1000 genomes] |
| rs3785398 | 0.89[ASN][1000 genomes] |
| rs7190694 | 0.94[ASN][1000 genomes] |
| rs7205440 | 0.84[ASN][1000 genomes] |
| rs732798 | 0.80[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7404928 | 0.92[ASN][1000 genomes] |
| rs7405373 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8182198 | 0.83[ASN][1000 genomes] |
| rs9924860 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9940072 | 0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9944293 | 0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRKCB | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014