SNP Report

Basic Infomation

Name	rs9924860 dbSNP
Location	chr:16,23897059
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 37)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10775269	0.84[CEU][hapmap]
rs11074587	0.84[CEU][hapmap]
rs11643715	0.82[ASN][1000 genomes]
rs11644907	0.91[JPT][hapmap]
rs12923337	0.90[ASN][1000 genomes]
rs12931116	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs12932420	0.81[CEU][hapmap]
rs12933794	0.81[CEU][hapmap]
rs1468130	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs195990	0.81[CEU][hapmap]
rs195991	0.80[CEU][hapmap]
rs195995	0.80[CEU][hapmap]
rs195999	0.81[CEU][hapmap]
rs2023669	0.83[ASN][1000 genomes]
rs2188356	0.81[CEU][hapmap]
rs28508212	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2878156	0.88[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs3785396	0.87[CHB][hapmap];0.90[CHD][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs3785397	0.86[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs3785398	0.89[ASN][1000 genomes]
rs3826259	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs3826261	0.88[CEU][hapmap];0.95[CHB][hapmap]
rs7190694	0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs7205440	0.84[ASN][1000 genomes]
rs732798	0.88[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs7404320	0.81[CEU][hapmap]
rs7404928	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs7405373	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8044722	0.81[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap]
rs8047317	0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.83[MEX][hapmap]
rs8051700	0.81[CEU][hapmap]
rs8057516	0.81[CEU][hapmap]
rs8182198	0.87[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs877657	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9806904	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs9940072	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9944293	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PRKCB	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 4)

eQTL related gene	Source
PRKCB	seeQTL
ACSM5	SCAN
UQCRC2	SCAN
GPR139	SCAN