SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 31)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10221006	0.86[JPT][hapmap]
rs10775269	0.86[JPT][hapmap]
rs11643715	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12932420	0.86[JPT][hapmap]
rs12933794	0.85[JPT][hapmap]
rs1858871	0.86[JPT][hapmap]
rs195990	0.86[JPT][hapmap]
rs195991	0.85[JPT][hapmap]
rs2023669	0.85[ASN][1000 genomes]
rs2878156	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs3785392	0.86[JPT][hapmap]
rs3785394	0.86[JPT][hapmap]
rs3785396	0.90[JPT][hapmap];0.80[TSI][hapmap];0.85[ASN][1000 genomes]
rs3785397	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs6497700	0.81[JPT][hapmap]
rs6497703	0.86[JPT][hapmap]
rs7190694	0.90[JPT][hapmap]
rs7205440	0.85[ASN][1000 genomes]
rs732798	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs7404320	0.86[JPT][hapmap]
rs7404928	0.90[JPT][hapmap]
rs8051531	0.86[JPT][hapmap]
rs8051700	0.86[JPT][hapmap]
rs8054675	0.85[JPT][hapmap]
rs8055773	0.84[JPT][hapmap]
rs8057516	0.86[JPT][hapmap]
rs8182198	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs9924831	0.86[JPT][hapmap]
rs9924860	0.91[JPT][hapmap]
rs9940072	0.86[JPT][hapmap]
rs9940744	0.85[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
PRKCB	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
FAM20B	SCAN
COG7	SCAN