SNP Report
Basic Infomation
| Name | rs8055831 dbSNP |
|---|---|
| Location | chr:16,23950185 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 57)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1005878 | 0.83[EUR][1000 genomes] |
| rs10221006 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10775269 | 0.88[CEU][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap] |
| rs11074587 | 0.88[CEU][hapmap] |
| rs11641926 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12446563 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12927751 | 0.84[ASN][1000 genomes] |
| rs12932420 | 0.92[CEU][hapmap];0.81[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs12933794 | 0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs13338431 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1465195 | 0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs169029 | 0.95[ASN][1000 genomes] |
| rs1858871 | 0.87[CEU][hapmap];0.81[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap] |
| rs195986 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs195987 | 0.98[ASN][1000 genomes] |
| rs195990 | 0.92[CEU][hapmap];0.81[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs195991 | 0.91[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs195995 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs195996 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.99[ASN][1000 genomes] |
| rs195997 | 0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs195999 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs196001 | 0.87[ASN][1000 genomes] |
| rs1989647 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2188356 | 0.92[CEU][hapmap];0.93[CHD][hapmap];0.84[GIH][hapmap];0.82[MEX][hapmap];0.82[ASN][1000 genomes] |
| rs28435782 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs28734145 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2878156 | 0.84[CEU][hapmap] |
| rs3785387 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3785388 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3785390 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3785391 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3785392 | 0.95[CEU][hapmap];0.81[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3785394 | 0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs3826261 | 0.84[CEU][hapmap] |
| rs55649386 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs56350292 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs60561757 | 0.82[EUR][1000 genomes] |
| rs6497700 | 0.91[CEU][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes] |
| rs6497703 | 0.96[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7196543 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.85[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7202347 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs732798 | 0.84[CEU][hapmap] |
| rs7404320 | 0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs8044722 | 0.91[CEU][hapmap] |
| rs8047317 | 0.81[CEU][hapmap] |
| rs8051531 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs8051700 | 0.92[CEU][hapmap];0.81[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs8053880 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8054675 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs8055482 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8055773 | 1.00[CEU][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs8055864 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8057516 | 0.91[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap] |
| rs9924831 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9924991 | 0.94[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9939895 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9940744 | 0.96[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRKCB | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014