SNP Report
Basic Infomation
| Name | rs196001 dbSNP |
|---|---|
| Location | chr:16,23962504 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10459766 | 0.81[EUR][1000 genomes] |
| rs11074587 | 0.81[EUR][1000 genomes] |
| rs12926067 | 0.85[EUR][1000 genomes] |
| rs12927751 | 0.87[EUR][1000 genomes] |
| rs12932420 | 0.87[EUR][1000 genomes] |
| rs12933794 | 0.87[EUR][1000 genomes] |
| rs169029 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs195986 | 0.86[ASN][1000 genomes] |
| rs195987 | 0.85[ASN][1000 genomes] |
| rs195990 | 0.89[EUR][1000 genomes] |
| rs195991 | 0.85[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs195995 | 0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs195996 | 0.86[ASN][1000 genomes] |
| rs195997 | 0.86[ASN][1000 genomes] |
| rs195999 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1989647 | 0.90[ASN][1000 genomes] |
| rs2188356 | 0.88[EUR][1000 genomes] |
| rs28734145 | 0.87[ASN][1000 genomes] |
| rs3785387 | 0.94[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3785388 | 0.90[ASN][1000 genomes] |
| rs3785390 | 0.88[ASN][1000 genomes] |
| rs3785391 | 0.88[ASN][1000 genomes] |
| rs55649386 | 0.88[ASN][1000 genomes] |
| rs7196543 | 0.89[ASN][1000 genomes] |
| rs7202347 | 0.86[ASN][1000 genomes] |
| rs7404320 | 0.89[EUR][1000 genomes] |
| rs8051390 | 0.83[EUR][1000 genomes] |
| rs8051574 | 0.84[EUR][1000 genomes] |
| rs8051700 | 0.89[EUR][1000 genomes] |
| rs8053880 | 0.87[ASN][1000 genomes] |
| rs8055482 | 0.87[ASN][1000 genomes] |
| rs8055831 | 0.87[ASN][1000 genomes] |
| rs8055864 | 0.87[ASN][1000 genomes] |
| rs8057516 | 0.86[EUR][1000 genomes] |
| rs9924991 | 0.87[ASN][1000 genomes] |
| rs9939895 | 0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRKCB | Distal transcriptional regulation |
| PRKCB | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014