SNP Report

Basic Infomation

Name	rs3785390 dbSNP
Location	chr:16,23956658
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 56)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1005878	0.92[EUR][1000 genomes]
rs10221006	0.96[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10775269	0.84[CEU][hapmap];0.90[JPT][hapmap]
rs11074587	0.85[CEU][hapmap];0.80[JPT][hapmap]
rs11641926	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12446563	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12927751	0.82[ASN][1000 genomes]
rs12932420	0.87[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs12933794	0.88[CEU][hapmap];0.90[JPT][hapmap]
rs13338431	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1465195	0.96[CEU][hapmap];0.80[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs169029	0.96[ASN][1000 genomes]
rs1858871	0.91[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs195986	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195987	0.98[ASN][1000 genomes]
rs195990	0.88[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs195991	0.88[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs195995	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs195996	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195997	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195999	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs196001	0.88[ASN][1000 genomes]
rs1989647	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2188356	0.88[CEU][hapmap]
rs28435782	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28734145	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2878156	0.80[CEU][hapmap]
rs3785387	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3785388	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3785391	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3785392	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3785394	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3826261	0.82[CEU][hapmap]
rs55649386	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56350292	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60561757	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6497700	0.96[CEU][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6497703	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7196543	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7202347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs732798	0.80[CEU][hapmap]
rs7404320	0.89[CEU][hapmap];0.91[JPT][hapmap]
rs8044722	0.87[CEU][hapmap]
rs8051531	0.96[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8051700	0.88[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs8053880	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8054675	0.95[CEU][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8055482	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8055773	0.95[CEU][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8055831	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8055864	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8057516	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs9924831	0.96[CEU][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9924991	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9939895	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9940744	1.00[CEU][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PRKCB	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)