SNP Report
Basic Infomation
| Name | rs60055466 dbSNP |
|---|---|
| Location | chr:16,23927440 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 41)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1005878 | 0.86[ASN][1000 genomes] |
| rs10221006 | 0.94[ASN][1000 genomes] |
| rs10459766 | 0.92[ASN][1000 genomes] |
| rs10775269 | 0.84[ASN][1000 genomes] |
| rs11074587 | 0.91[ASN][1000 genomes] |
| rs11641926 | 0.94[ASN][1000 genomes] |
| rs12446563 | 0.93[ASN][1000 genomes] |
| rs12926067 | 0.97[ASN][1000 genomes] |
| rs12927751 | 0.92[ASN][1000 genomes] |
| rs12932420 | 0.92[ASN][1000 genomes] |
| rs12933794 | 0.94[ASN][1000 genomes] |
| rs13338431 | 0.94[ASN][1000 genomes] |
| rs1465195 | 0.92[ASN][1000 genomes] |
| rs16972959 | 0.80[AMR][1000 genomes] |
| rs1858869 | 0.96[ASN][1000 genomes] |
| rs1858870 | 0.96[ASN][1000 genomes] |
| rs1858871 | 0.95[ASN][1000 genomes] |
| rs1858872 | 0.96[ASN][1000 genomes] |
| rs195990 | 0.89[ASN][1000 genomes] |
| rs195991 | 0.88[ASN][1000 genomes] |
| rs2188356 | 0.94[ASN][1000 genomes] |
| rs28435782 | 0.97[ASN][1000 genomes] |
| rs3785392 | 0.91[ASN][1000 genomes] |
| rs3785394 | 0.98[ASN][1000 genomes] |
| rs56213545 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs56350292 | 0.89[ASN][1000 genomes] |
| rs60561757 | 0.92[ASN][1000 genomes] |
| rs6497700 | 0.92[ASN][1000 genomes] |
| rs6497703 | 0.95[ASN][1000 genomes] |
| rs66923906 | 0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs67922443 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7404320 | 0.90[ASN][1000 genomes] |
| rs8051390 | 0.97[ASN][1000 genomes] |
| rs8051531 | 0.90[ASN][1000 genomes] |
| rs8051574 | 0.97[ASN][1000 genomes] |
| rs8051700 | 0.89[ASN][1000 genomes] |
| rs8054675 | 0.94[ASN][1000 genomes] |
| rs8055773 | 0.90[ASN][1000 genomes] |
| rs8057516 | 0.97[ASN][1000 genomes] |
| rs9924831 | 0.92[ASN][1000 genomes] |
| rs9940744 | 0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRKCB | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014