SNP Report

Basic Infomation

Name	rs1858872 dbSNP
Location	chr:16,23923520
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 46)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1005878	0.90[ASN][1000 genomes]
rs10221006	0.94[ASN][1000 genomes]
rs10459766	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10775269	0.87[ASN][1000 genomes]
rs11074587	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11641926	0.94[ASN][1000 genomes]
rs12446563	0.93[ASN][1000 genomes]
rs12926067	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12927751	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12932420	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12933794	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13338431	0.94[ASN][1000 genomes]
rs1465195	0.96[ASN][1000 genomes]
rs1858869	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1858870	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1858871	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs195986	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs195987	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs195990	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs195991	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs195995	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs195996	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs195997	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs195999	0.85[EUR][1000 genomes]
rs2188356	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28435782	0.97[ASN][1000 genomes]
rs3785392	0.91[ASN][1000 genomes]
rs3785394	0.98[ASN][1000 genomes]
rs56213545	0.93[ASN][1000 genomes]
rs56350292	0.89[ASN][1000 genomes]
rs60055466	0.96[ASN][1000 genomes]
rs60561757	0.96[ASN][1000 genomes]
rs6497700	0.96[ASN][1000 genomes]
rs6497703	0.99[ASN][1000 genomes]
rs66923906	0.95[ASN][1000 genomes]
rs67922443	0.96[ASN][1000 genomes]
rs7404320	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8051390	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8051531	0.90[ASN][1000 genomes]
rs8051574	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8051700	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8054675	0.94[ASN][1000 genomes]
rs8055773	0.90[ASN][1000 genomes]
rs8057516	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9924831	0.92[ASN][1000 genomes]
rs9940744	0.91[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PRKCB	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)