SNP Report

Basic Infomation

Name	rs7171953 dbSNP
Location	chr:15,91111627
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 49)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10775250	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10852133	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10852134	0.85[EUR][1000 genomes]
rs10852135	0.92[ASN][1000 genomes]
rs10852136	0.86[ASN][1000 genomes]
rs11073935	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11073937	0.98[ASN][1000 genomes]
rs11635656	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12148672	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12437503	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12438183	0.86[ASN][1000 genomes]
rs12901150	0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12915189	0.93[AFR][1000 genomes]
rs13313427	0.87[ASN][1000 genomes]
rs16944613	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34641633	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35635063	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35750622	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4352025	0.91[AFR][1000 genomes]
rs4352026	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4454948	0.91[AFR][1000 genomes]
rs4566137	0.91[ASN][1000 genomes]
rs5003701	0.88[EUR][1000 genomes]
rs55767443	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6416552	0.87[ASN][1000 genomes]
rs6416553	0.86[ASN][1000 genomes]
rs6416554	0.86[ASN][1000 genomes]
rs6496688	0.89[ASN][1000 genomes]
rs6496689	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6496690	0.91[ASN][1000 genomes]
rs6496692	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6496697	0.87[ASN][1000 genomes]
rs6496698	0.86[ASN][1000 genomes]
rs71311223	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7162041	0.87[EUR][1000 genomes]
rs7166173	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7166749	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7168764	0.87[ASN][1000 genomes]
rs7171629	0.87[ASN][1000 genomes]
rs7173175	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7180053	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7183319	0.91[ASN][1000 genomes]
rs7494813	0.82[EUR][1000 genomes]
rs7494949	0.89[ASN][1000 genomes]
rs7497204	0.91[AFR][1000 genomes]
rs7498042	0.90[AFR][1000 genomes]
rs8028854	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8031714	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8042497	0.92[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CRTC3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)