SNP Report
Basic Infomation
| Name | rs6496688 dbSNP |
|---|---|
| Location | chr:15,91090381 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10775250 | 0.98[ASN][1000 genomes] |
| rs10852133 | 0.98[ASN][1000 genomes] |
| rs10852135 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10852136 | 0.80[EUR][1000 genomes] |
| rs11073935 | 0.98[ASN][1000 genomes] |
| rs11073937 | 0.89[ASN][1000 genomes] |
| rs11635656 | 0.97[ASN][1000 genomes] |
| rs12148672 | 0.83[ASN][1000 genomes] |
| rs12438183 | 0.80[EUR][1000 genomes] |
| rs12901150 | 0.90[ASN][1000 genomes] |
| rs13313427 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4352026 | 0.90[ASN][1000 genomes] |
| rs4566137 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6416552 | 0.80[EUR][1000 genomes] |
| rs6416553 | 0.81[EUR][1000 genomes] |
| rs6416554 | 0.80[EUR][1000 genomes] |
| rs6496689 | 0.96[ASN][1000 genomes] |
| rs6496690 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6496697 | 0.80[EUR][1000 genomes] |
| rs6496698 | 0.81[EUR][1000 genomes] |
| rs71311223 | 0.87[ASN][1000 genomes] |
| rs7166173 | 0.89[ASN][1000 genomes] |
| rs7168764 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7171629 | 0.81[EUR][1000 genomes] |
| rs7171953 | 0.89[ASN][1000 genomes] |
| rs7173175 | 0.87[ASN][1000 genomes] |
| rs7180053 | 0.90[ASN][1000 genomes] |
| rs7183319 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7494949 | 0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8024734 | 0.83[EUR][1000 genomes] |
| rs8042497 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | Distal transcriptional regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014