SNP Report
Basic Infomation
| Name | rs6416553 dbSNP |
|---|---|
| Location | chr:15,91135411 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10852133 | 0.87[CHD][hapmap] |
| rs10852135 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10852136 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11073937 | 0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11636695 | 0.84[CHD][hapmap] |
| rs12148672 | 0.81[ASN][1000 genomes] |
| rs12438183 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12901150 | 0.92[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs13313427 | 0.83[CEU][hapmap];0.87[CHD][hapmap] |
| rs4352026 | 0.85[ASN][1000 genomes] |
| rs4566137 | 0.83[CEU][hapmap];0.87[CHD][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6416552 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6416554 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6496688 | 0.81[EUR][1000 genomes] |
| rs6496690 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6496691 | 0.81[AMR][1000 genomes] |
| rs6496697 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6496698 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6496699 | 0.81[AMR][1000 genomes] |
| rs71311223 | 0.84[ASN][1000 genomes] |
| rs7165429 | 0.84[CHD][hapmap] |
| rs7166173 | 0.85[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs7168764 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7171629 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7171953 | 0.86[ASN][1000 genomes] |
| rs7173175 | 0.85[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs7180053 | 0.91[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs7183319 | 0.83[CEU][hapmap];0.87[CHD][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7494949 | 0.81[EUR][1000 genomes] |
| rs8024734 | 0.83[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs8028854 | 1.00[GIH][hapmap] |
| rs8030799 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs8042497 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | Proximal transcriptional regulation |
| ENSG00000259212 | Distal transcriptional regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014