SNP Report
Basic Infomation
| Name | rs8030799 dbSNP |
|---|---|
| Location | chr:15,91109374 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10852134 | 0.85[ASN][1000 genomes] |
| rs10852136 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11073937 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12437503 | 0.95[ASN][1000 genomes] |
| rs12438183 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12915189 | 0.93[ASN][1000 genomes] |
| rs16944613 | 0.84[ASN][1000 genomes] |
| rs35635063 | 0.97[ASN][1000 genomes] |
| rs35750622 | 1.00[ASN][1000 genomes] |
| rs4352025 | 0.93[ASN][1000 genomes] |
| rs4454948 | 0.93[ASN][1000 genomes] |
| rs4566137 | 0.83[EUR][1000 genomes] |
| rs55767443 | 0.84[ASN][1000 genomes] |
| rs6416552 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6416553 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6416554 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6496690 | 0.80[EUR][1000 genomes] |
| rs6496697 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6496698 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7166749 | 0.94[ASN][1000 genomes] |
| rs7168764 | 0.81[EUR][1000 genomes] |
| rs7171629 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7183319 | 0.81[EUR][1000 genomes] |
| rs7494813 | 0.84[ASN][1000 genomes] |
| rs7494949 | 0.81[EUR][1000 genomes] |
| rs8024734 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs8028854 | 0.84[ASN][1000 genomes] |
| rs8042497 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014