SNP Report
Basic Infomation
| Name | rs4454948 dbSNP |
|---|---|
| Location | chr:15,91116173 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10852134 | 0.89[ASN][1000 genomes] |
| rs12148672 | 0.84[AFR][1000 genomes] |
| rs12437503 | 0.95[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12901150 | 0.94[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs12915189 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16944613 | 0.88[ASN][1000 genomes] |
| rs35110627 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs35635063 | 0.87[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs35750622 | 0.81[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4352025 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4352026 | 0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs55767443 | 0.87[ASN][1000 genomes] |
| rs6496696 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7166749 | 0.95[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7171953 | 0.91[AFR][1000 genomes] |
| rs7173175 | 0.88[AFR][1000 genomes] |
| rs7180053 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7494813 | 0.89[ASN][1000 genomes] |
| rs7496662 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7496865 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7497204 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7497700 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7498042 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs8024734 | 0.91[ASN][1000 genomes] |
| rs8028854 | 0.88[ASN][1000 genomes] |
| rs8030799 | 0.93[ASN][1000 genomes] |
| rs8038442 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000245479 | Distal transcriptional regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014