SNP Report
Basic Infomation
| Name | rs7498042 dbSNP |
|---|---|
| Location | chr:15,91119014 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12148672 | 0.82[AFR][1000 genomes] |
| rs12437503 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes] |
| rs12901150 | 0.85[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs12915189 | 1.00[ASW][hapmap];0.95[CEU][hapmap];0.98[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs35110627 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs35635063 | 0.86[AFR][1000 genomes] |
| rs4352025 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4352026 | 0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4454948 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6496696 | 0.87[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7166749 | 0.94[AFR][1000 genomes] |
| rs7171953 | 0.90[AFR][1000 genomes] |
| rs7173175 | 0.92[YRI][hapmap];0.87[AFR][1000 genomes] |
| rs7180053 | 0.90[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7496662 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7496865 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7497204 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7497700 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs8031714 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs8038442 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | Distal transcriptional regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014