SNP Report

Basic Infomation

Name	rs6496690 dbSNP
Location	chr:15,91097401
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 32)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10775250	1.00[ASN][1000 genomes]
rs10852133	1.00[ASN][1000 genomes]
rs10852135	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10852136	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11073935	1.00[ASN][1000 genomes]
rs11073937	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11635656	0.99[ASN][1000 genomes]
rs12148672	0.85[ASN][1000 genomes]
rs12438183	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12901150	0.92[ASN][1000 genomes]
rs13313427	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4352026	0.92[ASN][1000 genomes]
rs4566137	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6416552	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6416553	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6416554	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6496688	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6496689	0.98[ASN][1000 genomes]
rs6496697	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6496698	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71311223	0.89[ASN][1000 genomes]
rs7166173	0.91[ASN][1000 genomes]
rs7168764	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7171629	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7171953	0.91[ASN][1000 genomes]
rs7173175	0.89[ASN][1000 genomes]
rs7180053	0.92[ASN][1000 genomes]
rs7183319	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7494949	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8024734	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8030799	0.80[EUR][1000 genomes]
rs8042497	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CRTC3	Distal transcriptional regulation
CRTC3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)