SNP Report

Basic Infomation

Name	rs10852133 dbSNP
Location	chr:15,91098715
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 52)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10775250	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10852134	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10852135	0.97[ASN][1000 genomes]
rs10852136	0.84[CHB][hapmap];0.87[CHD][hapmap]
rs11073935	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11073937	0.91[ASN][1000 genomes]
rs11631439	0.80[TSI][hapmap]
rs11635656	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11636695	0.80[CHB][hapmap]
rs12148672	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12437503	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12438183	0.84[CHB][hapmap]
rs12901150	1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs12906864	0.86[CEU][hapmap]
rs12915189	0.87[GIH][hapmap]
rs13313427	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs13379889	0.80[TSI][hapmap]
rs16944613	0.80[EUR][1000 genomes]
rs16944683	0.81[CEU][hapmap]
rs17180057	0.80[CHB][hapmap]
rs35635063	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35750622	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4352026	0.92[ASN][1000 genomes]
rs4566137	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4932359	0.81[CEU][hapmap]
rs5011653	0.81[CEU][hapmap]
rs55767443	0.80[EUR][1000 genomes]
rs6416552	0.84[CHB][hapmap];0.80[ASN][1000 genomes]
rs6416553	0.87[CHD][hapmap]
rs6416554	0.84[CHB][hapmap]
rs6496688	0.98[ASN][1000 genomes]
rs6496689	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.83[JPT][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6496690	1.00[ASN][1000 genomes]
rs6496697	0.84[CHB][hapmap];0.87[CHD][hapmap];0.80[ASN][1000 genomes]
rs71311223	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7162041	0.97[EUR][1000 genomes]
rs7165429	0.80[CHB][hapmap]
rs7166173	0.88[CEU][hapmap];0.95[CHB][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7166749	0.85[EUR][1000 genomes]
rs7168764	0.96[ASN][1000 genomes]
rs7171629	0.80[ASN][1000 genomes]
rs7171953	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7173175	0.87[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7178774	0.81[CEU][hapmap]
rs7180053	0.89[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs7183319	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7494813	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7494949	0.94[CHB][hapmap];0.84[JPT][hapmap];0.98[ASN][1000 genomes]
rs8026218	0.80[TSI][hapmap]
rs8026682	0.80[TSI][hapmap]
rs8028854	0.94[TSI][hapmap]
rs8042497	0.90[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CRTC3	Distal transcriptional regulation
CRTC3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
PPM1M	SCAN
SEC11A	SCAN