SNP Report
Basic Infomation
| Name | rs13313427 dbSNP |
|---|---|
| Location | chr:15,91090768 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10775250 | 0.96[ASN][1000 genomes] |
| rs10852133 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs10852135 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10852136 | 0.83[CEU][hapmap];0.84[CHB][hapmap];0.87[CHD][hapmap] |
| rs11073935 | 0.96[ASN][1000 genomes] |
| rs11073937 | 0.87[ASN][1000 genomes] |
| rs11635656 | 0.95[ASN][1000 genomes] |
| rs11636695 | 0.80[CHB][hapmap] |
| rs12148672 | 0.82[ASN][1000 genomes] |
| rs12438183 | 0.83[CEU][hapmap];0.84[CHB][hapmap] |
| rs12901150 | 1.00[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs17180057 | 0.80[CHB][hapmap] |
| rs4352026 | 0.88[ASN][1000 genomes] |
| rs4566137 | 0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.88[MEX][hapmap];0.95[MKK][hapmap];0.85[TSI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6416552 | 0.83[CEU][hapmap];0.84[CHB][hapmap] |
| rs6416553 | 0.83[CEU][hapmap];0.87[CHD][hapmap] |
| rs6416554 | 0.83[CEU][hapmap];0.84[CHB][hapmap] |
| rs6496688 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6496689 | 1.00[CHB][hapmap];0.83[GIH][hapmap];0.83[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs6496690 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6496697 | 0.83[CEU][hapmap];0.84[CHB][hapmap];0.87[CHD][hapmap] |
| rs71311223 | 0.85[ASN][1000 genomes] |
| rs7165429 | 0.80[CHB][hapmap] |
| rs7166173 | 0.95[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs7168764 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7171953 | 0.87[ASN][1000 genomes] |
| rs7173175 | 0.95[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs7180053 | 0.89[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs7183319 | 0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.88[MEX][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7494949 | 1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs8024734 | 0.83[CEU][hapmap] |
| rs8042497 | 0.81[CEU][hapmap];0.90[CHB][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | Distal transcriptional regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014