SNP Report
Basic Infomation
| Name | rs7162041 dbSNP |
|---|---|
| Location | chr:15,91089633 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10775250 | 0.98[EUR][1000 genomes] |
| rs10852133 | 0.97[EUR][1000 genomes] |
| rs10852134 | 0.93[EUR][1000 genomes] |
| rs11073935 | 0.86[AFR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11635656 | 0.85[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12148672 | 0.88[EUR][1000 genomes] |
| rs12437503 | 0.83[EUR][1000 genomes] |
| rs35635063 | 0.83[EUR][1000 genomes] |
| rs35750622 | 0.83[EUR][1000 genomes] |
| rs6496689 | 0.80[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs71311223 | 0.84[EUR][1000 genomes] |
| rs7166173 | 0.84[EUR][1000 genomes] |
| rs7166749 | 0.83[EUR][1000 genomes] |
| rs7171953 | 0.87[EUR][1000 genomes] |
| rs7173175 | 0.87[EUR][1000 genomes] |
| rs7494813 | 0.91[AFR][1000 genomes];0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | Distal transcriptional regulation |
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014