SNP Report
Basic Infomation
| Name | rs6496692 dbSNP |
|---|---|
| Location | chr:15,91109626 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11073937 | 0.83[ASN][1000 genomes] |
| rs12148672 | 0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12437503 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12901150 | 0.82[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12915189 | 0.81[AFR][1000 genomes] |
| rs34641633 | 0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs35635063 | 0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs35750622 | 0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs4352026 | 0.82[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6496691 | 0.95[ASN][1000 genomes] |
| rs71311223 | 0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7166173 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7166749 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs7171953 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7173175 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7180053 | 0.85[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs8042497 | 0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CRTC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014