SNP Report

Basic Infomation

Name	rs6456379 dbSNP
Location	chr:6,20893247
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 61)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11751916	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11752477	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs11752772	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11759888	0.84[ASN][1000 genomes]
rs12198243	0.85[CEU][hapmap]
rs13197106	0.88[CHB][hapmap];0.82[AMR][1000 genomes]
rs13197235	0.92[ASN][1000 genomes]
rs13213979	0.89[CHB][hapmap]
rs13217519	0.89[CHB][hapmap]
rs34799469	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4077405	0.82[CEU][hapmap];0.81[TSI][hapmap]
rs4131667	0.85[CEU][hapmap];0.85[TSI][hapmap]
rs4293992	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4370355	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.92[ASN][1000 genomes]
rs4478387	0.81[CHB][hapmap]
rs4492184	0.96[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4496779	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4585542	0.81[CHB][hapmap]
rs4710942	0.94[CHB][hapmap]
rs4710943	0.89[CHB][hapmap]
rs4710950	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4710954	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4712551	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4712563	0.94[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs4712565	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs6456385	0.95[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs6913658	0.83[ASN][1000 genomes]
rs6920918	0.95[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs6925153	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7763704	0.84[CEU][hapmap]
rs9295479	0.83[CHB][hapmap]
rs9295481	0.89[CHB][hapmap]
rs9295482	0.94[CHB][hapmap];0.83[GIH][hapmap]
rs9295486	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9348446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9348448	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9350278	1.00[CHB][hapmap]
rs9350296	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9350298	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9356754	0.95[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9356755	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9358362	0.89[CHB][hapmap]
rs9358371	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9358377	0.89[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.81[MEX][hapmap]
rs9366360	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9366367	0.81[CEU][hapmap]
rs9368227	0.89[CHB][hapmap]
rs9368228	0.89[CHB][hapmap]
rs9368237	0.85[EUR][1000 genomes]
rs9368238	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9368239	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9368241	0.84[ASN][1000 genomes]
rs9368242	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9368243	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.84[ASN][1000 genomes]
rs9368247	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9368248	1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.92[ASN][1000 genomes]
rs9368251	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.85[MEX][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9368253	0.92[ASN][1000 genomes]
rs9460572	0.94[CHB][hapmap]
rs9460575	0.82[ASN][1000 genomes]
rs9465931	0.89[CHB][hapmap];0.93[CHD][hapmap]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)