SNP Report

Basic Infomation

Name	rs4712565 dbSNP
Location	chr:6,20920272
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 42)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11752477	0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs13197106	0.83[CEU][hapmap];0.94[CHB][hapmap];0.93[ASN][1000 genomes]
rs13197235	0.83[ASN][1000 genomes]
rs13213979	0.84[CHB][hapmap]
rs13217519	0.84[CHB][hapmap]
rs4293992	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs4370355	0.85[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs4492184	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs4710942	0.89[CHB][hapmap]
rs4710943	0.84[CHB][hapmap]
rs4710950	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[JPT][hapmap]
rs4710954	0.84[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap]
rs4712551	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs4712563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6456379	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs6456385	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6913658	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6920918	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6925153	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[JPT][hapmap]
rs9295481	0.84[CHB][hapmap]
rs9295482	0.88[CHB][hapmap]
rs9348446	0.85[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap]
rs9348448	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs9350278	0.95[CHB][hapmap]
rs9350296	0.95[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs9350298	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs9356754	0.90[CHB][hapmap];0.97[CHD][hapmap];0.84[JPT][hapmap]
rs9356755	0.95[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap]
rs9358362	0.84[CHB][hapmap]
rs9358371	0.85[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap]
rs9358377	0.85[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs9368227	0.84[CHB][hapmap]
rs9368228	0.83[CHB][hapmap]
rs9368238	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs9368243	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap]
rs9368247	0.82[ASN][1000 genomes]
rs9368248	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs9368251	0.85[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs9368253	0.82[ASN][1000 genomes]
rs9460572	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9460575	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9465931	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.85[JPT][hapmap];0.96[MEX][hapmap];0.80[MKK][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)