SNP Report

Basic Infomation

Name	rs9350278 dbSNP
Location	chr:6,20745715
Allele	T/A

LD-proxy of rSNPs(r²>0.8) (count: 49)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11752477	1.00[CHB][hapmap]
rs13197106	0.88[CHB][hapmap]
rs13213979	0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13217519	0.89[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs34933309	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35499882	0.85[ASN][1000 genomes]
rs4293992	0.95[CHB][hapmap]
rs4370355	1.00[CHB][hapmap]
rs4478387	0.81[CHB][hapmap]
rs4492184	0.95[CHB][hapmap]
rs4585542	0.81[CHB][hapmap]
rs4710942	0.95[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4710943	0.95[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.96[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4710950	1.00[CHB][hapmap]
rs4710954	1.00[CHB][hapmap]
rs4712551	1.00[CHB][hapmap]
rs4712563	0.94[CHB][hapmap]
rs4712565	0.95[CHB][hapmap]
rs62397655	0.95[ASN][1000 genomes]
rs6456379	1.00[CHB][hapmap]
rs6456385	0.95[CHB][hapmap]
rs6920918	0.95[CHB][hapmap]
rs6925153	1.00[CHB][hapmap]
rs71563973	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9295479	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9295481	0.82[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9295482	0.94[CHB][hapmap];0.88[CHD][hapmap];0.85[ASN][1000 genomes]
rs9348446	1.00[CHB][hapmap]
rs9348448	1.00[CHB][hapmap]
rs9350279	0.88[ASN][1000 genomes]
rs9350296	1.00[CHB][hapmap]
rs9350298	0.95[CHB][hapmap]
rs9356750	0.97[ASN][1000 genomes]
rs9356754	0.95[CHB][hapmap]
rs9356755	1.00[CHB][hapmap]
rs9358362	0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9358371	1.00[CHB][hapmap]
rs9358377	0.89[CHB][hapmap]
rs9366359	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9368227	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9368228	0.90[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9368229	0.96[ASN][1000 genomes]
rs9368230	0.97[ASN][1000 genomes]
rs9368238	0.95[CHB][hapmap]
rs9368243	1.00[CHB][hapmap];0.80[CHD][hapmap]
rs9368248	1.00[CHB][hapmap]
rs9368251	1.00[CHB][hapmap]
rs9460572	0.94[CHB][hapmap]
rs9465931	0.89[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)