SNP Report

Basic Infomation

Name	rs9358371 dbSNP
Location	chr:6,20810194
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 56)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11751916	0.96[ASN][1000 genomes]
rs11752477	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11752772	0.95[ASN][1000 genomes]
rs11759888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13197106	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes]
rs13197235	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13213979	0.90[CHB][hapmap]
rs13217519	0.89[CHB][hapmap]
rs34799469	0.87[ASN][1000 genomes]
rs35499882	0.81[ASN][1000 genomes]
rs4293992	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4370355	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4478387	0.81[CHB][hapmap]
rs4492184	0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs4496779	0.97[ASN][1000 genomes]
rs4585542	0.81[CHB][hapmap]
rs4710942	0.94[CHB][hapmap]
rs4710943	0.89[CHB][hapmap]
rs4710950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4710954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4712551	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4712563	0.81[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap]
rs4712565	0.85[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap]
rs6456379	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6456385	0.83[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs6899514	1.00[YRI][hapmap]
rs6920918	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs6925153	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9295479	0.83[CHB][hapmap]
rs9295481	0.89[CHB][hapmap]
rs9295482	0.94[CHB][hapmap];0.81[ASN][1000 genomes]
rs9348446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348448	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs9350278	1.00[CHB][hapmap]
rs9350279	0.81[ASN][1000 genomes]
rs9350296	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs9350298	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes]
rs9356754	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9356755	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs9358362	0.90[CHB][hapmap]
rs9358377	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs9366360	0.90[ASN][1000 genomes]
rs9368227	0.90[CHB][hapmap]
rs9368228	0.89[CHB][hapmap]
rs9368237	0.93[ASN][1000 genomes]
rs9368238	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9368239	0.96[ASN][1000 genomes]
rs9368241	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9368242	0.87[ASN][1000 genomes]
rs9368243	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9368247	0.83[ASN][1000 genomes]
rs9368248	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9368251	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9368253	0.83[EUR][1000 genomes]
rs9460572	0.82[CEU][hapmap];0.89[CHB][hapmap]
rs9465931	0.85[CEU][hapmap];0.89[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)