SNP Report
Basic Infomation
| Name | rs4710950 dbSNP |
|---|---|
| Location | chr:6,20803099 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 58)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11751916 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11752477 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs11752772 | 0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11759888 | 0.91[ASN][1000 genomes] |
| rs12198243 | 0.81[CEU][hapmap] |
| rs13197106 | 0.88[CHB][hapmap] |
| rs13197235 | 0.84[ASN][1000 genomes] |
| rs13213979 | 0.89[CHB][hapmap] |
| rs13217519 | 0.89[CHB][hapmap] |
| rs34799469 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs35499882 | 0.81[ASN][1000 genomes] |
| rs4077405 | 0.85[CEU][hapmap] |
| rs4131667 | 0.81[CEU][hapmap] |
| rs4293992 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs4370355 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs4478387 | 0.81[CHB][hapmap] |
| rs4492184 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4496779 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4585542 | 0.81[CHB][hapmap] |
| rs4710942 | 0.94[CHB][hapmap] |
| rs4710943 | 0.89[CHB][hapmap] |
| rs4710954 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs4712551 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4712563 | 0.94[CHB][hapmap];0.87[JPT][hapmap] |
| rs4712565 | 0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[JPT][hapmap] |
| rs6456379 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6456385 | 0.95[CHB][hapmap];0.89[JPT][hapmap] |
| rs6920918 | 0.95[CHB][hapmap];0.84[JPT][hapmap] |
| rs6925153 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9295479 | 0.83[CHB][hapmap] |
| rs9295481 | 0.89[CHB][hapmap] |
| rs9295482 | 0.94[CHB][hapmap];0.89[GIH][hapmap];0.81[ASN][1000 genomes] |
| rs9295486 | 0.84[EUR][1000 genomes] |
| rs9348446 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs9348448 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9350278 | 1.00[CHB][hapmap] |
| rs9350279 | 0.81[ASN][1000 genomes] |
| rs9350296 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9350298 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap] |
| rs9356754 | 0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs9356755 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9358362 | 0.89[CHB][hapmap] |
| rs9358371 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs9358377 | 0.89[CHB][hapmap];0.95[CHD][hapmap] |
| rs9366360 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9368227 | 0.89[CHB][hapmap] |
| rs9368228 | 0.89[CHB][hapmap] |
| rs9368237 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9368238 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9368239 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9368241 | 0.89[ASN][1000 genomes] |
| rs9368242 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9368243 | 1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.89[ASN][1000 genomes] |
| rs9368247 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9368248 | 1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs9368251 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs9460572 | 0.94[CHB][hapmap] |
| rs9465931 | 0.89[CHB][hapmap];0.93[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000233848 | Proximal transcriptional regulation |
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014