SNP Report

Basic Infomation

Name	rs13197235 dbSNP
Location	chr:6,20874562
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 40)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11751916	0.82[ASN][1000 genomes]
rs11752477	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11752772	0.80[ASN][1000 genomes]
rs11759888	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13197106	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34799469	0.89[ASN][1000 genomes]
rs4293992	0.82[ASN][1000 genomes]
rs4370355	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4492184	0.84[ASN][1000 genomes]
rs4496779	0.81[ASN][1000 genomes]
rs4710950	0.84[ASN][1000 genomes]
rs4710954	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4712551	0.82[ASN][1000 genomes]
rs4712563	0.82[ASN][1000 genomes]
rs4712565	0.83[ASN][1000 genomes]
rs6456379	0.92[ASN][1000 genomes]
rs6456385	0.82[ASN][1000 genomes]
rs6913658	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6920918	0.82[ASN][1000 genomes]
rs6925153	0.84[ASN][1000 genomes]
rs9295486	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9348446	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9348448	0.89[ASN][1000 genomes]
rs9350296	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9350298	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9356754	0.81[ASN][1000 genomes]
rs9356755	0.89[ASN][1000 genomes]
rs9358371	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9358377	0.86[EUR][1000 genomes]
rs9366360	0.85[ASN][1000 genomes]
rs9368238	0.83[ASN][1000 genomes]
rs9368239	0.80[ASN][1000 genomes]
rs9368241	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9368242	0.89[ASN][1000 genomes]
rs9368243	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9368247	0.98[ASN][1000 genomes]
rs9368248	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9368251	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9368253	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9460575	0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SOX4	Distal transcriptional regulation
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)