SNP Report
Basic Infomation
| Name | rs6913658 dbSNP |
|---|---|
| Location | chr:6,20921411 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11752477 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs13197106 | 0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13197235 | 0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4370355 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4712563 | 0.93[ASN][1000 genomes] |
| rs4712565 | 0.82[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6456379 | 0.83[ASN][1000 genomes] |
| rs6456385 | 0.85[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6920918 | 0.98[ASN][1000 genomes] |
| rs9295486 | 0.83[ASN][1000 genomes] |
| rs9350298 | 0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9358377 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9368247 | 0.80[ASN][1000 genomes] |
| rs9368248 | 0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9368251 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9368253 | 0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9460572 | 0.90[ASN][1000 genomes] |
| rs9460575 | 0.80[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9465931 | 0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014