SNP Report

Basic Infomation

Name	rs13197106 dbSNP
Location	chr:6,20913692
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 34)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11752477	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11759888	0.82[AMR][1000 genomes]
rs13197235	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4370355	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4710942	0.82[CHB][hapmap]
rs4710950	0.88[CHB][hapmap]
rs4710954	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes]
rs4712551	0.83[CHB][hapmap]
rs4712563	0.94[CHB][hapmap];0.88[ASN][1000 genomes]
rs4712565	0.83[CEU][hapmap];0.94[CHB][hapmap];0.93[ASN][1000 genomes]
rs6456379	0.88[CHB][hapmap];0.82[AMR][1000 genomes]
rs6456385	0.80[CEU][hapmap];0.94[CHB][hapmap];0.95[ASN][1000 genomes]
rs6913658	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6920918	0.94[CHB][hapmap];0.93[ASN][1000 genomes]
rs6925153	0.88[CHB][hapmap]
rs9295482	0.81[CHB][hapmap]
rs9295486	0.85[AMR][1000 genomes]
rs9348446	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes]
rs9348448	0.88[CHB][hapmap]
rs9350278	0.88[CHB][hapmap]
rs9350296	0.83[CHB][hapmap]
rs9350298	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9356754	0.83[CHB][hapmap]
rs9356755	0.88[CHB][hapmap]
rs9358371	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes]
rs9358377	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9368241	0.82[AMR][1000 genomes]
rs9368243	1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[AMR][1000 genomes]
rs9368248	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9368251	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9368253	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9460572	1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs9460575	0.93[ASN][1000 genomes]
rs9465931	0.83[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)