SNP Report

Basic Infomation

Name	rs9358377 dbSNP
Location	chr:6,20903971
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 34)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11752477	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13197106	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13197235	0.86[EUR][1000 genomes]
rs4293992	0.84[CHB][hapmap]
rs4370355	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes]
rs4492184	0.84[CHB][hapmap]
rs4710942	0.84[CHB][hapmap]
rs4710950	0.89[CHB][hapmap];0.95[CHD][hapmap]
rs4710954	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs4712551	0.89[CHB][hapmap]
rs4712563	0.83[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.94[ASN][1000 genomes]
rs4712565	0.85[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs6456379	0.89[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.81[MEX][hapmap]
rs6456385	0.85[CEU][hapmap];0.95[CHB][hapmap];0.80[JPT][hapmap];0.90[ASN][1000 genomes]
rs6913658	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6920918	0.81[CEU][hapmap];0.95[CHB][hapmap];0.92[ASN][1000 genomes]
rs6925153	0.89[CHB][hapmap];0.95[CHD][hapmap]
rs9295482	0.83[CHB][hapmap]
rs9348446	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs9348448	0.89[CHB][hapmap]
rs9350278	0.89[CHB][hapmap]
rs9350296	0.89[CHB][hapmap]
rs9350298	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.80[JPT][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9356754	0.84[CHB][hapmap];0.95[CHD][hapmap]
rs9356755	0.89[CHB][hapmap];0.95[CHD][hapmap]
rs9358371	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs9368238	0.84[CHB][hapmap]
rs9368243	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.88[TSI][hapmap]
rs9368248	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs9368251	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9368253	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9460572	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9460575	0.92[ASN][1000 genomes]
rs9465931	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDKAL1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)