SNP Report
Basic Infomation
| Name | rs34933309 dbSNP |
|---|---|
| Location | chr:6,20741444 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13213979 | 0.98[ASN][1000 genomes] |
| rs13217519 | 0.98[ASN][1000 genomes] |
| rs35499882 | 0.83[ASN][1000 genomes] |
| rs4710942 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4710943 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs62397655 | 0.98[ASN][1000 genomes] |
| rs71563973 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9295479 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9295481 | 0.99[ASN][1000 genomes] |
| rs9295482 | 0.83[ASN][1000 genomes] |
| rs9350278 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9350279 | 0.86[ASN][1000 genomes] |
| rs9356750 | 0.99[ASN][1000 genomes] |
| rs9358362 | 0.99[ASN][1000 genomes] |
| rs9366359 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9368227 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9368228 | 0.99[ASN][1000 genomes] |
| rs9368229 | 0.98[ASN][1000 genomes] |
| rs9368230 | 0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| E2F3 | Distal transcriptional regulation |
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014