SNP Report

Basic Infomation

Name	rs6141734 dbSNP
Location	chr:20,31074372
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 33)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12480462	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1555133	0.95[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17356521	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1737891	1.00[JPT][hapmap]
rs2143534	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs293533	0.84[ASN][1000 genomes]
rs293535	1.00[JPT][hapmap]
rs293537	0.97[ASN][1000 genomes]
rs293538	0.84[ASN][1000 genomes]
rs293540	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs293541	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs293542	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs293545	1.00[JPT][hapmap]
rs293548	1.00[JPT][hapmap]
rs293551	1.00[JPT][hapmap]
rs293552	1.00[JPT][hapmap]
rs293554	0.87[MEX][hapmap]
rs293555	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap]
rs293556	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs293560	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs293561	0.83[MEX][hapmap]
rs293566	0.83[MEX][hapmap]
rs293567	0.83[MEX][hapmap]
rs34310097	0.96[EUR][1000 genomes]
rs4911097	0.83[MEX][hapmap]
rs4911234	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4911235	0.85[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.83[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6058714	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6087398	0.86[JPT][hapmap]
rs6119879	0.83[MEX][hapmap]
rs6141728	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs756001	0.81[ASN][1000 genomes]
rs875519	1.00[CHB][hapmap];0.81[CHD][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap]

rSNP related genes

Symbol	Regulation type
C20orf112	Proximal transcriptional regulation
C20orf112	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)