SNP Report
Basic Infomation
| Name | rs293538 dbSNP |
|---|---|
| Location | chr:20,31069944 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1737891 | 0.91[ASN][1000 genomes] |
| rs293533 | 1.00[ASN][1000 genomes] |
| rs293535 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs293537 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs293539 | 0.83[EUR][1000 genomes] |
| rs293540 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs293541 | 0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs293542 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs293545 | 0.93[ASN][1000 genomes] |
| rs293546 | 0.93[ASN][1000 genomes] |
| rs293547 | 0.92[ASN][1000 genomes] |
| rs293548 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs293551 | 0.84[EUR][1000 genomes] |
| rs293552 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs293555 | 0.84[EUR][1000 genomes] |
| rs293556 | 0.84[EUR][1000 genomes] |
| rs293560 | 0.84[EUR][1000 genomes] |
| rs4911234 | 0.84[ASN][1000 genomes] |
| rs6058714 | 0.92[ASN][1000 genomes] |
| rs6141734 | 0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASXL1 | Distal transcriptional regulation |
| C20orf112 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014