SNP Report
Basic Infomation
| Name | rs293548 dbSNP |
|---|---|
| Location | chr:20,31081487 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1737891 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs293533 | 0.92[ASN][1000 genomes] |
| rs293535 | 0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];0.91[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs293537 | 0.85[EUR][1000 genomes] |
| rs293538 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs293540 | 1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes] |
| rs293541 | 1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes] |
| rs293542 | 0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs293545 | 0.81[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.89[MKK][hapmap];0.87[TSI][hapmap];0.82[YRI][hapmap];0.98[ASN][1000 genomes] |
| rs293546 | 0.82[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs293547 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs293551 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes] |
| rs293552 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs293555 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes] |
| rs293556 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes] |
| rs293557 | 0.82[EUR][1000 genomes] |
| rs293560 | 0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes] |
| rs4911234 | 1.00[JPT][hapmap] |
| rs4911235 | 1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6058714 | 0.84[ASN][1000 genomes] |
| rs6087398 | 0.86[JPT][hapmap] |
| rs6141734 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PLAGL2 | Distal transcriptional regulation |
| POFUT1 | Distal transcriptional regulation |
| C20orf112 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014