SNP Report

Basic Infomation

Name	rs293541 dbSNP
Location	chr:20,31075661
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1555133	0.91[CHB][hapmap];0.81[CHD][hapmap]
rs17356521	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1737891	1.00[JPT][hapmap]
rs2143534	0.84[ASN][1000 genomes]
rs293533	0.86[ASN][1000 genomes]
rs293535	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[EUR][1000 genomes]
rs293537	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293538	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs293539	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs293540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293542	1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs293545	0.87[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs293546	0.81[ASN][1000 genomes]
rs293548	1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes]
rs293551	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs293552	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs293555	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs293556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs293557	0.90[EUR][1000 genomes]
rs293560	0.85[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs4911234	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4911235	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6087398	0.86[JPT][hapmap]
rs6141734	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs756001	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs875519	1.00[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
C20orf112	Proximal transcriptional regulation
C20orf112	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)